Variant report
| Variant | rs9442801 |
|---|---|
| Chromosome Location | chr6:73213231-73213232 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:73213112..73214700-chr6:73221890..73224075,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10214605 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10455268 | 1.00[CHB][hapmap] |
| rs10484913 | 1.00[CHB][hapmap] |
| rs10485213 | 1.00[CHB][hapmap] |
| rs10943050 | 1.00[CHB][hapmap] |
| rs10943051 | 1.00[CHB][hapmap] |
| rs10943055 | 1.00[CHB][hapmap] |
| rs12189933 | 1.00[CHB][hapmap] |
| rs12194741 | 1.00[CHB][hapmap] |
| rs12199549 | 1.00[CHB][hapmap] |
| rs12200468 | 1.00[CHB][hapmap] |
| rs12204139 | 1.00[CHB][hapmap] |
| rs12204989 | 1.00[CHB][hapmap] |
| rs12208053 | 1.00[CHB][hapmap] |
| rs12208907 | 1.00[CHB][hapmap] |
| rs12210850 | 1.00[CHB][hapmap] |
| rs12212562 | 1.00[CHB][hapmap] |
| rs12212818 | 1.00[CHB][hapmap] |
| rs12214894 | 1.00[CHB][hapmap] |
| rs12214895 | 1.00[CHB][hapmap] |
| rs12374630 | 1.00[CHB][hapmap] |
| rs12374631 | 1.00[CHB][hapmap] |
| rs17692715 | 1.00[CHB][hapmap] |
| rs17692874 | 1.00[CHB][hapmap] |
| rs17692898 | 1.00[CHB][hapmap] |
| rs17729195 | 1.00[CHB][hapmap] |
| rs17749408 | 1.00[CHB][hapmap] |
| rs17749420 | 1.00[CHB][hapmap] |
| rs6453591 | 1.00[CHB][hapmap] |
| rs6935174 | 1.00[CHB][hapmap] |
| rs7768673 | 1.00[CHB][hapmap] |
| rs7776215 | 1.00[CHB][hapmap] |
| rs9442802 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9446693 | 1.00[YRI][hapmap] |
| rs9446695 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9446696 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023809 | chr6:73157813-73477997 | Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv538303 | chr6:73157813-73477997 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:73209600-73213800 | Weak transcription | Fetal Brain Male | brain |
