Variant report

Variant	rs9446692
Chromosome Location	chr6:73228407-73228408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10447318	1.00[CHB][hapmap]
rs10447319	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10455265	0.81[EUR][1000 genomes]
rs10805962	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10805963	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10943029	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10943030	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11754088	0.80[AMR][1000 genomes]
rs12207993	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12210205	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12215286	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12216223	0.81[EUR][1000 genomes]
rs17691724	1.00[CHB][hapmap]
rs28652881	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34772650	0.81[EUR][1000 genomes]
rs6912302	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6922202	0.81[EUR][1000 genomes]
rs72946202	0.80[AMR][1000 genomes]
rs7764686	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9293887	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9446693	1.00[CHD][hapmap]
rs9446694	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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