Variant report

Variant	rs11754088
Chromosome Location	chr6:73262999-73263000
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73256563..73258779-chr6:73261159..73263806,2	K562	blood:
2	chr6:73127401..73129885-chr6:73262946..73264619,2	K562	blood:
3	chr6:73239217..73240861-chr6:73262225..73264019,2	K562	blood:
4	chr6:73262215..73264630-chr6:73332275..73334908,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10447318	1.00[CHB][hapmap]
rs10447319	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10455265	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10805962	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10805963	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10943028	1.00[ASN][1000 genomes]
rs10943029	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10943030	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11756583	1.00[ASN][1000 genomes]
rs12154175	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12190317	1.00[ASN][1000 genomes]
rs12194365	1.00[ASN][1000 genomes]
rs12194589	1.00[ASN][1000 genomes]
rs12194594	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12207905	1.00[ASN][1000 genomes]
rs12207993	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12209479	1.00[ASN][1000 genomes]
rs12210205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216052	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12216223	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195485	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1334343	1.00[ASN][1000 genomes]
rs17691724	1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28652881	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34772650	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35490354	1.00[ASN][1000 genomes]
rs6912302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922202	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776072	1.00[ASN][1000 genomes]
rs9293887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446692	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73257000-73264800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:73259000-73263400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:73261000-73265200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:73261000-73266000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:73261200-73265800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:73262000-73263400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:73262200-73263400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:73262200-73266000	Enhancers	HSMM	muscle
9	chr6:73262200-73266200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:73262400-73263000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:73262400-73263000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:73262400-73263000	Enhancers	NH-A	brain
13	chr6:73262400-73263200	Flanking Active TSS	NHEK	skin
14	chr6:73262400-73264600	Weak transcription	Pancreas	Pancrea
15	chr6:73262400-73265800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:73262600-73263000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:73262600-73263000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:73262600-73263000	Flanking Active TSS	A549	lung
19	chr6:73262600-73263400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:73262600-73263400	Enhancers	HSMMtube	muscle
21	chr6:73262600-73263600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:73262600-73263600	Enhancers	NHLF	lung
23	chr6:73262600-73263800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr6:73262600-73263800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:73262600-73263800	Flanking Active TSS	K562	blood
26	chr6:73262600-73264800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:73262600-73265000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:73262600-73265200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:73262600-73265200	Enhancers	NHDF-Ad	bronchial
30	chr6:73262600-73265800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr6:73262600-73266000	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr6:73262600-73266600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:73262800-73263000	Flanking Active TSS	Osteobl	bone
34	chr6:73262800-73263200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr6:73262800-73263200	Flanking Active TSS	HMEC	breast
36	chr6:73262800-73263800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr6:73262800-73264200	Enhancers	H9 Cell Line	embryonic stem cell

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