Variant report

Variant	rs6922202
Chromosome Location	chr6:73269210-73269211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73268900..73271716-chr6:73288163..73291530,3	K562	blood:
2	chr6:73169058..73171767-chr6:73269199..73271288,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10447318	1.00[CHB][hapmap]
rs10447319	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10455265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10805962	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10805963	1.00[ASN][1000 genomes]
rs10943028	1.00[ASN][1000 genomes]
rs10943029	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10943030	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11754088	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756583	1.00[ASN][1000 genomes]
rs12154175	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12190317	1.00[ASN][1000 genomes]
rs12194365	1.00[ASN][1000 genomes]
rs12194589	1.00[ASN][1000 genomes]
rs12194594	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12207905	1.00[ASN][1000 genomes]
rs12207993	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12209479	1.00[ASN][1000 genomes]
rs12210205	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215286	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216052	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12216223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195485	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1334343	1.00[ASN][1000 genomes]
rs17691724	1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28652881	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34772650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35490354	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6912302	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946202	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764686	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776072	1.00[ASN][1000 genomes]
rs9293887	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446692	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73263800-73271000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:73265000-73270400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:73265000-73270600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:73265200-73270400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:73265600-73270600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:73265600-73270800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:73266200-73270600	Weak transcription	Osteobl	bone
8	chr6:73266400-73269400	Weak transcription	NHEK	skin
9	chr6:73266600-73270000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:73266600-73270000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:73268200-73269400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:73268800-73269400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:73268800-73269600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:73269000-73269600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:73269200-73270600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:73269200-73270800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:73269200-73271000	Active TSS	K562	blood
18	chr6:73269200-73271200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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