Variant report

Variant	rs10805962
Chromosome Location	chr6:73209343-73209344
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73199395..73201874-chr6:73208797..73210317,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10447318	1.00[CHB][hapmap]
rs10447319	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10455265	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10455268	1.00[CHB][hapmap]
rs10485213	1.00[CHB][hapmap]
rs10805963	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943028	1.00[ASN][1000 genomes]
rs10943029	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943030	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943050	1.00[CHB][hapmap]
rs10943051	1.00[CHB][hapmap]
rs10943055	1.00[CHB][hapmap]
rs11754088	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11756583	1.00[ASN][1000 genomes]
rs12154175	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12189933	1.00[CHB][hapmap]
rs12190317	1.00[ASN][1000 genomes]
rs12194365	1.00[ASN][1000 genomes]
rs12194589	1.00[ASN][1000 genomes]
rs12194594	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12194741	1.00[CHB][hapmap]
rs12199549	1.00[CHB][hapmap]
rs12200468	1.00[CHB][hapmap]
rs12204139	1.00[CHB][hapmap]
rs12207905	1.00[ASN][1000 genomes]
rs12207993	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208053	1.00[CHB][hapmap]
rs12208907	1.00[CHB][hapmap]
rs12209479	1.00[ASN][1000 genomes]
rs12210205	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210850	1.00[CHB][hapmap]
rs12212562	1.00[CHB][hapmap]
rs12212818	1.00[CHB][hapmap]
rs12214894	1.00[CHB][hapmap]
rs12214895	1.00[CHB][hapmap]
rs12215286	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216052	1.00[ASN][1000 genomes]
rs12216223	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12374630	1.00[CHB][hapmap]
rs12374631	1.00[CHB][hapmap]
rs13195485	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1334343	1.00[ASN][1000 genomes]
rs17691724	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17692715	1.00[CHB][hapmap]
rs17692874	1.00[CHB][hapmap]
rs17692898	1.00[CHB][hapmap]
rs17729195	1.00[CHB][hapmap]
rs17749408	1.00[CHB][hapmap]
rs17749420	1.00[CHB][hapmap]
rs28652881	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34772650	0.87[AMR][1000 genomes]
rs35490354	1.00[ASN][1000 genomes]
rs6453591	1.00[CHB][hapmap]
rs6912302	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922202	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6935174	1.00[CHB][hapmap]
rs72946202	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7764686	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768673	1.00[CHB][hapmap]
rs7776072	1.00[ASN][1000 genomes]
rs7776215	1.00[CHB][hapmap]
rs9293887	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446692	0.94[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73208000-73209600	Enhancers	Fetal Brain Male	brain
2	chr6:73209200-73209400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:73209200-73209400	Enhancers	Esophagus	oesophagus

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