Variant report

Variant	rs12209479
Chromosome Location	chr6:73213831-73213832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73213112..73214700-chr6:73221890..73224075,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10447318	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10447319	1.00[CHB][hapmap]
rs10455265	1.00[ASN][1000 genomes]
rs10805962	1.00[ASN][1000 genomes]
rs10805963	1.00[ASN][1000 genomes]
rs10943028	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943029	1.00[ASN][1000 genomes]
rs10943030	1.00[ASN][1000 genomes]
rs11754088	1.00[ASN][1000 genomes]
rs11756583	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154175	1.00[ASN][1000 genomes]
rs12190317	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194365	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194589	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194594	1.00[ASN][1000 genomes]
rs12207905	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207993	1.00[ASN][1000 genomes]
rs12210205	1.00[ASN][1000 genomes]
rs12215286	1.00[ASN][1000 genomes]
rs12216052	1.00[ASN][1000 genomes]
rs12216223	1.00[ASN][1000 genomes]
rs13195485	1.00[ASN][1000 genomes]
rs1334343	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17691724	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28652881	1.00[ASN][1000 genomes]
rs35490354	1.00[ASN][1000 genomes]
rs6912302	1.00[ASN][1000 genomes]
rs6922202	1.00[ASN][1000 genomes]
rs72946202	1.00[ASN][1000 genomes]
rs7764686	1.00[ASN][1000 genomes]
rs7776072	1.00[ASN][1000 genomes]
rs9293887	1.00[ASN][1000 genomes]
rs9446692	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73213800-73214200	Enhancers	Fetal Brain Male	brain

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