Variant report

Variant	rs34772650
Chromosome Location	chr6:73269876-73269877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10455265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10805962	0.87[AMR][1000 genomes]
rs10943029	0.90[AMR][1000 genomes]
rs10943030	0.90[AMR][1000 genomes]
rs11754088	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12154175	0.96[AMR][1000 genomes]
rs12194594	0.96[AMR][1000 genomes]
rs12207993	0.90[AMR][1000 genomes]
rs12210205	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12215286	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12216052	0.90[AMR][1000 genomes]
rs12216223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13195485	0.96[AMR][1000 genomes]
rs17691724	0.96[AMR][1000 genomes]
rs28652881	0.90[AMR][1000 genomes]
rs35490354	0.83[AMR][1000 genomes]
rs6912302	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6922202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72946202	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7764686	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9293887	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73263800-73271000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:73265000-73270400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:73265000-73270600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:73265200-73270400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:73265600-73270600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:73265600-73270800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:73266200-73270600	Weak transcription	Osteobl	bone
8	chr6:73266600-73270000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:73266600-73270000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:73269200-73270600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:73269200-73270800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:73269200-73271000	Active TSS	K562	blood
13	chr6:73269200-73271200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:73269400-73270600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:73269400-73271200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:73269600-73270600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:73269600-73270600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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