Variant report

Variant	rs9458816
Chromosome Location	chr6:163775360-163775361
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163757896..163760585-chr6:163774528..163776997,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11966616	1.00[AMR][1000 genomes]
rs11968571	1.00[AMR][1000 genomes]
rs56668150	1.00[AMR][1000 genomes]
rs6903442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738544	1.00[AMR][1000 genomes]
rs7775002	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163767600-163776200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:163767600-163776600	Enhancers	Brain Cingulate Gyrus	brain
3	chr6:163768200-163775600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:163768200-163776400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:163768200-163776400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:163768400-163775800	Weak transcription	Right Atrium	heart
7	chr6:163768600-163775800	Weak transcription	Esophagus	oesophagus
8	chr6:163769000-163776000	Weak transcription	Psoas Muscle	Psoas
9	chr6:163770400-163775600	Weak transcription	HSMM	muscle
10	chr6:163770600-163775800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:163770600-163775800	Weak transcription	Left Ventricle	heart
12	chr6:163771200-163776000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:163772200-163778000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:163772200-163778600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:163772400-163778800	Enhancers	Placenta	Placenta
16	chr6:163772600-163775800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:163773400-163776800	Enhancers	Brain Angular Gyrus	brain
18	chr6:163773400-163777600	Enhancers	Fetal Muscle Leg	muscle
19	chr6:163773600-163775800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:163773600-163778000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr6:163773800-163775800	Enhancers	HUVEC	blood vessel
22	chr6:163773800-163776200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:163774000-163775400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:163774000-163776000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:163774000-163776000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr6:163774200-163775800	Enhancers	Brain Anterior Caudate	brain
27	chr6:163774200-163776000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:163774400-163775400	Enhancers	Brain Hippocampus Middle	brain
29	chr6:163774400-163775400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:163774400-163775600	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:163774400-163775800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:163774400-163776600	Enhancers	Brain Substantia Nigra	brain
33	chr6:163775000-163775400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:163775000-163775600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:163775000-163776000	Weak transcription	Fetal Thymus	thymus
36	chr6:163775000-163776000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr6:163775000-163777600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:163775000-163777600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr6:163775000-163778000	Enhancers	Hela-S3	cervix
40	chr6:163775000-163778400	Enhancers	Fetal Heart	heart
41	chr6:163775200-163775400	Enhancers	H9 Cell Line	embryonic stem cell
42	chr6:163775200-163775400	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr6:163775200-163775800	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr6:163775200-163776000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr6:163775200-163776200	Enhancers	NH-A	brain
46	chr6:163775200-163776200	Enhancers	NHDF-Ad	bronchial
47	chr6:163775200-163776400	Enhancers	Right Ventricle	heart
48	chr6:163775200-163777200	Enhancers	Fetal Lung	lung
49	chr6:163775200-163777400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:163775200-163777400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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