Variant report

Variant	rs7775002
Chromosome Location	chr6:163739035-163739036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163729760..163732219-chr6:163738312..163741230,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11966616	1.00[AMR][1000 genomes]
rs56668150	1.00[AMR][1000 genomes]
rs6903442	1.00[AMR][1000 genomes]
rs7738544	1.00[AMR][1000 genomes]
rs9458816	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163721600-163739400	Weak transcription	Right Ventricle	heart
2	chr6:163722800-163739600	Weak transcription	Right Atrium	heart
3	chr6:163724400-163739400	Weak transcription	Left Ventricle	heart
4	chr6:163731600-163742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:163732000-163749600	Weak transcription	Spleen	Spleen
6	chr6:163734000-163741600	Weak transcription	A549	lung
7	chr6:163736000-163739200	Enhancers	Brain Hippocampus Middle	brain
8	chr6:163736000-163739600	Weak transcription	Psoas Muscle	Psoas
9	chr6:163736000-163740400	Enhancers	Brain Cingulate Gyrus	brain
10	chr6:163736200-163739400	Enhancers	Brain Substantia Nigra	brain
11	chr6:163736200-163745800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:163736400-163741200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:163736600-163741200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:163737200-163739400	Weak transcription	Brain Angular Gyrus	brain
15	chr6:163737200-163739400	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:163737200-163744800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:163737800-163739400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:163737800-163739600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:163738000-163740400	Enhancers	Fetal Heart	heart
20	chr6:163738800-163739200	Weak transcription	Brain Anterior Caudate	brain
21	chr6:163738800-163740400	Enhancers	Adipose Nuclei	Adipose
22	chr6:163739000-163740000	Enhancers	Brain Inferior Temporal Lobe	brain

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