Variant report

Variant	rs7738544
Chromosome Location	chr6:163739470-163739471
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163729760..163732219-chr6:163738312..163741230,2	MCF-7	breast:
2	chr6:163733010..163737483-chr6:163739253..163742400,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-11	chr6:163739466-163739943	NONHSAT115956

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11966616	1.00[AMR][1000 genomes]
rs56668150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6903442	1.00[AMR][1000 genomes]
rs7775002	1.00[AMR][1000 genomes]
rs9458816	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163722800-163739600	Weak transcription	Right Atrium	heart
2	chr6:163731600-163742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:163732000-163749600	Weak transcription	Spleen	Spleen
4	chr6:163734000-163741600	Weak transcription	A549	lung
5	chr6:163736000-163739600	Weak transcription	Psoas Muscle	Psoas
6	chr6:163736000-163740400	Enhancers	Brain Cingulate Gyrus	brain
7	chr6:163736200-163745800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:163736400-163741200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:163736600-163741200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:163737200-163744800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:163737800-163739600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:163738000-163740400	Enhancers	Fetal Heart	heart
13	chr6:163738800-163740400	Enhancers	Adipose Nuclei	Adipose
14	chr6:163739000-163740000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr6:163739200-163740000	Enhancers	Brain Anterior Caudate	brain
16	chr6:163739400-163739800	Transcr. at gene 5' and 3'	Brain Hippocampus Middle	brain
17	chr6:163739400-163739800	Flanking Active TSS	Brain Substantia Nigra	brain
18	chr6:163739400-163739800	Enhancers	HUVEC	blood vessel
19	chr6:163739400-163740000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:163739400-163740000	Enhancers	Fetal Muscle Leg	muscle
21	chr6:163739400-163740200	Enhancers	Brain Angular Gyrus	brain
22	chr6:163739400-163740400	Enhancers	Left Ventricle	heart
23	chr6:163739400-163740400	Enhancers	Right Ventricle	heart

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