Variant report

Variant	rs9459896
Chromosome Location	chr6:167567303-167567304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10080419	1.00[AMR][1000 genomes]
rs35430176	1.00[AMR][1000 genomes]
rs9457276	1.00[AMR][1000 genomes]
rs9457278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9457279	1.00[YRI][hapmap]
rs9459886	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9459891	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs9459892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9459895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9459898	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
6	esv2752099	chr6:167448181-167579102	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1018193	chr6:167491589-167797294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv538544	chr6:167491589-167797294	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv469673	chr6:167500376-167658532	Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv482439	chr6:167500376-167658532	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv2758094	chr6:167501204-167845935	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	esv2759492	chr6:167501204-168176733	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv482873	chr6:167521620-167679133	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167534000-167573400	Weak transcription	Right Atrium	heart
2	chr6:167564200-167567800	Flanking Active TSS	GM12878-XiMat	blood
3	chr6:167565000-167568000	Enhancers	Spleen	Spleen
4	chr6:167565400-167569200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:167565600-167569400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:167565800-167575600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:167566000-167575600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:167566400-167567400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:167566600-167567400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:167566600-167567400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:167566600-167567400	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr6:167566600-167568000	Enhancers	Small Intestine	intestine
13	chr6:167566800-167567400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:167566800-167567400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:167566800-167567400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:167566800-167567400	Active TSS	Muscle Satellite Cultured Cells	--
17	chr6:167566800-167567400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:167566800-167567400	Active TSS	Brain Substantia Nigra	brain
19	chr6:167566800-167567400	Active TSS	HSMM	muscle
20	chr6:167566800-167567400	Active TSS	Osteobl	bone
21	chr6:167566800-167567600	Flanking Active TSS	Primary B cells from peripheral blood	blood
22	chr6:167566800-167567600	Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr6:167566800-167569200	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:167566800-167570600	Enhancers	Fetal Brain Male	brain
25	chr6:167567000-167567400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr6:167567000-167567400	Active TSS	Brain Angular Gyrus	brain
27	chr6:167567000-167567400	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr6:167567000-167567400	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr6:167567000-167567400	Bivalent Enhancer	HepG2	liver
30	chr6:167567000-167567400	Enhancers	HUVEC	blood vessel
31	chr6:167567000-167569400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:167567200-167567400	Active TSS	Primary T cells fromperipheralblood	blood
33	chr6:167567200-167567400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr6:167567200-167567400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:167567200-167567400	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr6:167567200-167567400	Flanking Active TSS	Brain Cingulate Gyrus	brain
37	chr6:167567200-167567400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr6:167567200-167567400	Enhancers	NH-A	brain
39	chr6:167567200-167567600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:167567200-167568200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:167567200-167569000	Enhancers	Monocytes-CD14+_RO01746	blood

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