Variant report

Variant	rs946197
Chromosome Location	chr1:56602308-56602309
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10888957	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206730	0.83[AMR][1000 genomes]
rs11206737	0.88[AMR][1000 genomes]
rs1229947	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12407856	0.87[ASN][1000 genomes]
rs34846893	0.87[ASN][1000 genomes]
rs6588608	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6657024	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6680237	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6697082	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs706413	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514852	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs946197	ZFYVE9	cis	cerebellum	SCAN
rs946197	HSPB11	cis	parietal	SCAN
rs946197	GPX7	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56598400-56602800	Weak transcription	Psoas Muscle	Psoas
2	chr1:56598600-56603800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:56600000-56603200	Weak transcription	NHLF	lung
4	chr1:56600600-56604400	Enhancers	Hela-S3	cervix
5	chr1:56600600-56604800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:56601200-56602600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:56601200-56602600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:56601200-56604600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:56601600-56602800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:56601600-56602800	Weak transcription	HUVEC	blood vessel
11	chr1:56601600-56602800	Weak transcription	Osteobl	bone
12	chr1:56601600-56603000	Enhancers	Fetal Muscle Leg	muscle
13	chr1:56601800-56610400	Weak transcription	Aorta	Aorta
14	chr1:56602000-56603200	Enhancers	Fetal Heart	heart
15	chr1:56602200-56604000	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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