Variant report

Variant	rs1229947
Chromosome Location	chr1:56597724-56597725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10888957	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206730	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11206737	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12407856	0.89[ASN][1000 genomes]
rs34846893	0.89[ASN][1000 genomes]
rs4927305	0.80[EUR][1000 genomes]
rs6588607	0.80[EUR][1000 genomes]
rs6588608	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657024	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6680237	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6697082	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706413	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7514852	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946197	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56586600-56598200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56597200-56597800	Enhancers	Left Ventricle	heart
3	chr1:56597200-56601400	Enhancers	Primary T cells from cord blood	blood
4	chr1:56597600-56599000	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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