Variant report

Variant	rs9464181
Chromosome Location	chr6:54918186-54918187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12333040	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16886169	0.81[YRI][hapmap]
rs2143797	0.82[YRI][hapmap]
rs57863301	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762739	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464166	0.91[YRI][hapmap]
rs9475072	0.84[YRI][hapmap]
rs9475073	0.83[YRI][hapmap]
rs9475124	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475131	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475142	0.89[AFR][1000 genomes]
rs9475144	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs9475163	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54918000-54928200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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