The 2.0 version of rSNPBase
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Variant report
Variant
rs9475144
Chromosome Location
chr6:54976146-54976147
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr6:54710928..54713066-chr6:54974094..54976437,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000168143
Chromatin interaction
Extended variants information (count: 11 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:11)
rs_ID
r
2
[population]
rs57863301
0.82[AFR][1000 genomes]
rs7762739
0.91[YRI][hapmap];0.93[AFR][1000 genomes]
rs9464166
0.82[YRI][hapmap]
rs9464181
0.89[AFR][1000 genomes]
rs9475072
0.83[YRI][hapmap]
rs9475073
0.82[YRI][hapmap]
rs9475124
0.82[AFR][1000 genomes]
rs9475131
0.89[AFR][1000 genomes]
rs9475140
0.89[AFR][1000 genomes]
rs9475142
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475163
0.87[AFR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links