Variant report

Variant	rs9475131
Chromosome Location	chr6:54930524-54930525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12333040	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16886169	0.91[YRI][hapmap]
rs16886182	0.83[YRI][hapmap]
rs2143797	0.82[YRI][hapmap]
rs57863301	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762739	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464161	0.83[YRI][hapmap]
rs9464162	0.83[YRI][hapmap]
rs9464166	0.91[YRI][hapmap]
rs9464181	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475061	0.81[YRI][hapmap]
rs9475062	0.83[YRI][hapmap]
rs9475064	0.83[YRI][hapmap]
rs9475072	0.92[YRI][hapmap]
rs9475073	0.91[YRI][hapmap]
rs9475124	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475142	0.89[AFR][1000 genomes]
rs9475144	0.91[YRI][hapmap];0.89[AFR][1000 genomes]
rs9475163	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54929400-54930800	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr6:54929800-54931600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr6:54930000-54930800	Enhancers	Pancreas	Pancrea
4	chr6:54930200-54930800	Enhancers	Fetal Brain Male	brain
5	chr6:54930200-54930800	Enhancers	Fetal Heart	heart
6	chr6:54930200-54931000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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