Variant report

Variant	rs9468565
Chromosome Location	chr6:29610195-29610196
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:29608179..29610477-chr6:29617988..29619609,2	K562	blood:
2	chr6:29598626..29603210-chr6:29607516..29611410,5	K562	blood:
3	chr6:29609719..29612322-chr6:29612804..29614354,2	K562	blood:

Variant related genes	Relation type
ENSG00000204681	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10214740	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17178077	1.00[AFR][1000 genomes]
rs9295809	0.84[AFR][1000 genomes]
rs9461546	1.00[EUR][1000 genomes]
rs9468558	1.00[EUR][1000 genomes]
rs9468566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468569	1.00[AFR][1000 genomes]
rs9468578	1.00[AFR][1000 genomes]
rs9468581	0.94[AFR][1000 genomes]
rs9468584	1.00[EUR][1000 genomes]
rs9468590	0.89[AFR][1000 genomes]
rs9500949	0.94[AFR][1000 genomes]
rs9500950	0.94[AFR][1000 genomes]
rs9500951	0.94[AFR][1000 genomes]
rs9500952	0.94[AFR][1000 genomes]
rs9500953	0.94[AFR][1000 genomes]
rs9500954	0.88[AFR][1000 genomes]
rs9500955	1.00[EUR][1000 genomes]
rs9500959	0.89[AFR][1000 genomes]
rs9501680	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv969292	chr6:29604881-29612154	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29608400-29610600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:29608400-29610800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:29608400-29611000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:29608400-29611600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr6:29608400-29616400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:29608600-29610200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:29608600-29610400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr6:29608800-29610400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:29608800-29611200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:29609200-29610200	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:29609200-29610200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:29609200-29610200	Enhancers	Stomach Mucosa	stomach
13	chr6:29609200-29610400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr6:29609400-29610200	Enhancers	Primary B cells from cord blood	blood
15	chr6:29609600-29610200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:29609600-29617200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:29609800-29610800	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:29609800-29615600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:29609800-29615600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:29610000-29610200	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr6:29610000-29610400	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:29610000-29610600	Enhancers	K562	blood
23	chr6:29610000-29610800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr6:29610000-29611400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:29610000-29611600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:29610000-29615400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:29610000-29615400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:29610000-29615400	Weak transcription	HMEC	breast
29	chr6:29610000-29615400	Weak transcription	NHEK	skin
30	chr6:29610000-29615600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:29610000-29617200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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