Variant report

Variant	rs9500954
Chromosome Location	chr6:29649175-29649176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:29647749-29649223	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
ZFP57	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17178077	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9295809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468565	0.88[AFR][1000 genomes]
rs9468566	0.88[AFR][1000 genomes]
rs9468569	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468578	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468581	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9468590	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9500949	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9500950	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9500951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9500952	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9500953	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9500959	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9501680	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv883530	chr6:29645038-29677641	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv10808	chr6:29648051-29653183	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29625000-29663600	Weak transcription	Right Atrium	heart
2	chr6:29646000-29651400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:29646200-29651400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:29646200-29651400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:29646800-29651400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:29647000-29649600	Weak transcription	Spleen	Spleen
7	chr6:29647000-29651400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:29647000-29651400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:29647400-29651600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:29647600-29649200	Active TSS	Fetal Heart	heart
11	chr6:29648000-29649200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
12	chr6:29648000-29649200	Bivalent/Poised TSS	Primary T cells fromperipheralblood	blood
13	chr6:29648000-29651400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:29648200-29649200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
15	chr6:29648200-29651400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:29648400-29649200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:29648400-29649200	Active TSS	NHEK	skin
18	chr6:29648600-29649200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:29648600-29649200	Active TSS	Adipose Nuclei	Adipose
20	chr6:29648800-29649200	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
21	chr6:29648800-29649200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:29648800-29649200	Bivalent/Poised TSS	Placenta	Placenta
23	chr6:29648800-29651400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:29648800-29662600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:29649000-29651200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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