Variant report

Variant	rs9468578
Chromosome Location	chr6:29630646-29630647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10214740	0.81[AFR][1000 genomes]
rs17178077	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9295809	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468565	1.00[AFR][1000 genomes]
rs9468566	1.00[AFR][1000 genomes]
rs9468569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468581	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9468590	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9500949	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9500950	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9500951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9500952	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9500953	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9500954	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9500959	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9501680	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29620000-29631200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:29624800-29631600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:29625000-29663600	Weak transcription	Right Atrium	heart
4	chr6:29626600-29631400	Weak transcription	Fetal Heart	heart
5	chr6:29628600-29631800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:29628600-29632000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:29628800-29631600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:29629000-29630800	Enhancers	NHEK	skin
9	chr6:29629000-29632000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:29629200-29631200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:29629600-29632000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:29629800-29630800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:29629800-29634400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:29630000-29630800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:29630000-29631800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:29630000-29631800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:29630000-29632000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:29630000-29632000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:29630000-29633400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:29630200-29632000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:29630200-29632400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr6:29630400-29631800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:29630400-29633800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:29630600-29631000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:29630600-29631200	Active TSS	Brain Cingulate Gyrus	brain
26	chr6:29630600-29631200	Active TSS	Brain Hippocampus Middle	brain
27	chr6:29630600-29633400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:29630600-29633400	Weak transcription	Brain Substantia Nigra	brain
29	chr6:29630600-29633600	Weak transcription	Brain Angular Gyrus	brain
30	chr6:29630600-29633600	Weak transcription	Brain Anterior Caudate	brain
31	chr6:29630600-29633800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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