Variant report

Variant	rs9469548
Chromosome Location	chr6:11585397-11585398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11583569..11586638-chr6:12012591..12014537,3	MCF-7	breast:
2	chr6:11585011..11586237-chr6:12289305..12290255,5	K562	blood:
3	chr6:11585369..11588205-chr6:11589273..11592735,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10456073	0.95[ASN][1000 genomes]
rs10456408	0.86[EUR][1000 genomes]
rs10456409	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947294	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947297	0.81[AMR][1000 genomes]
rs10947298	0.86[EUR][1000 genomes]
rs10947299	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947300	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947301	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947305	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947330	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10947356	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10947357	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10947400	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10947402	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10947403	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10947419	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12189605	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12189776	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12189829	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12190208	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12191269	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12191798	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12192607	0.98[ASN][1000 genomes]
rs12192728	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12193222	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12193579	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12194303	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12194423	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12194504	0.98[ASN][1000 genomes]
rs12194522	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12194708	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12195075	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12195374	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12196157	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12197783	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12199315	0.95[ASN][1000 genomes]
rs12199737	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12201467	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12201652	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12202370	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12203104	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12203396	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12203843	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12204093	0.98[ASN][1000 genomes]
rs12207526	0.95[ASN][1000 genomes]
rs12207574	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12208383	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12208387	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12208514	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12209347	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12209878	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12209963	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12210023	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12210076	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12211376	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12211930	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12212790	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12214484	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12215719	0.81[AMR][1000 genomes]
rs12524640	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12525082	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12526369	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16868542	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16868544	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16871460	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16871461	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16871481	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16871482	0.98[ASN][1000 genomes]
rs16871484	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17697296	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17697372	0.83[ASN][1000 genomes]
rs17697397	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17764876	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17764967	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2275398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28651839	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs489364	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55923988	0.92[EUR][1000 genomes]
rs56132761	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9461842	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9461895	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469363	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9469368	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9469544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469545	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469546	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9791196	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11567600-11586200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:11567600-11586400	Weak transcription	Fetal Stomach	stomach
3	chr6:11567600-11586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:11567800-11586400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:11568000-11586200	Weak transcription	Liver	Liver
6	chr6:11568000-11586600	Weak transcription	Brain Angular Gyrus	brain
7	chr6:11568600-11586800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:11571800-11586600	Weak transcription	Ovary	ovary
9	chr6:11575800-11586200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:11576000-11586200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:11576000-11586400	Weak transcription	HepG2	liver
12	chr6:11579200-11586400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:11580200-11586400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:11583200-11585400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:11584200-11585400	Enhancers	NH-A	brain
16	chr6:11584200-11586600	Enhancers	HSMMtube	muscle
17	chr6:11584400-11586600	Enhancers	HSMM	muscle
18	chr6:11584600-11585400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:11584600-11586200	Weak transcription	Osteobl	bone
20	chr6:11584600-11587200	Enhancers	A549	lung
21	chr6:11584800-11586600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:11585000-11585400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:11585000-11585800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:11585000-11586400	Weak transcription	Fetal Lung	lung
25	chr6:11585200-11585400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:11585200-11586200	Weak transcription	NHLF	lung
27	chr6:11585200-11587200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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