Variant report

Variant	rs9469561
Chromosome Location	chr6:11587156-11587157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11585369..11588205-chr6:11589273..11592735,3	MCF-7	breast:
2	chr6:11586656..11588418-chr6:12286272..12289815,3	MCF-7	breast:
3	chr6:11585833..11588310-chr6:12287891..12289601,2	MCF-7	breast:
4	chr6:11586620..11588311-chr6:11818479..11820491,2	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10456408	0.86[EUR][1000 genomes]
rs10456409	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947294	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947297	0.81[AMR][1000 genomes]
rs10947298	0.86[EUR][1000 genomes]
rs10947299	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947300	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947301	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947305	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947330	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10947356	0.94[EUR][1000 genomes]
rs10947357	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10947400	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10947402	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10947403	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10947419	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12189605	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12189776	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12189829	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12190208	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12191269	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12191798	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12192728	0.89[EUR][1000 genomes]
rs12193222	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12193579	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12194303	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12194423	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12194522	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12194708	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12195075	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12195374	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196157	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12197783	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12199737	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12201467	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12201652	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12202370	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12203104	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12203396	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12203843	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12207574	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12208383	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12208387	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12208514	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12209347	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12209878	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12209963	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12210023	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12210076	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12211376	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12211930	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12212790	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12214484	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12215719	0.81[AMR][1000 genomes]
rs12524640	0.86[EUR][1000 genomes]
rs12525082	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12526369	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16868542	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16868544	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16871460	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16871461	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16871481	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16871484	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17697296	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17697397	0.86[EUR][1000 genomes]
rs17764876	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17764967	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2275398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651839	0.89[EUR][1000 genomes]
rs489364	0.94[EUR][1000 genomes]
rs55923988	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56132761	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9461842	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9461895	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469363	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9469368	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9469544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469545	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469546	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791196	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11584600-11587200	Enhancers	A549	lung
2	chr6:11585200-11587200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:11585400-11587400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:11585400-11587400	Enhancers	HUVEC	blood vessel
5	chr6:11585600-11587200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:11586000-11587400	Enhancers	NHDF-Ad	bronchial
7	chr6:11586000-11587800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:11586200-11587200	Enhancers	Fetal Intestine Large	intestine
9	chr6:11586200-11587400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:11586200-11587400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:11586200-11587400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:11586200-11587400	Enhancers	Placenta	Placenta
13	chr6:11586200-11587600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:11586200-11587800	Enhancers	NH-A	brain
15	chr6:11586200-11591200	Enhancers	NHLF	lung
16	chr6:11586400-11587200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:11586400-11587200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:11586400-11587200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:11586400-11587200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:11586400-11587200	Enhancers	Adipose Nuclei	Adipose
21	chr6:11586400-11587200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:11586400-11587200	Enhancers	Colon Smooth Muscle	Colon
23	chr6:11586400-11587200	Enhancers	Duodenum Mucosa	Duodenum
24	chr6:11586400-11587200	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr6:11586400-11587200	Enhancers	Placenta Amnion	Placenta Amnion
26	chr6:11586400-11587200	Enhancers	Rectal Smooth Muscle	rectum
27	chr6:11586400-11587200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
28	chr6:11586400-11587400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr6:11586400-11587400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:11586400-11587400	Enhancers	Stomach Smooth Muscle	stomach
31	chr6:11586400-11587400	Enhancers	HepG2	liver
32	chr6:11586400-11587600	Enhancers	Fetal Stomach	stomach
33	chr6:11586600-11587200	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr6:11586600-11587200	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr6:11586600-11587200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr6:11586600-11587200	Enhancers	Brain Angular Gyrus	brain
37	chr6:11586600-11587200	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr6:11586600-11587200	Enhancers	Ovary	ovary
39	chr6:11586600-11587200	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr6:11586600-11587400	Enhancers	Fetal Muscle Leg	muscle
41	chr6:11586800-11587200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr6:11586800-11587200	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr6:11586800-11587400	Enhancers	Fetal Muscle Trunk	muscle
44	chr6:11586800-11587600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:11586800-11588200	Active TSS	HSMMtube	muscle
46	chr6:11587000-11587200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
47	chr6:11587000-11587200	Enhancers	Aorta	Aorta
48	chr6:11587000-11587400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:11587000-11587400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:11587000-11587400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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