Variant report

Variant	rs9474757
Chromosome Location	chr6:54058326-54058327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10046453	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12333151	0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs28837994	0.86[AFR][1000 genomes]
rs55853397	1.00[AFR][1000 genomes]
rs56341219	0.81[AFR][1000 genomes]
rs57136553	0.83[AFR][1000 genomes]
rs58270498	0.81[AFR][1000 genomes]
rs6931929	0.98[AFR][1000 genomes]
rs73741456	0.93[AFR][1000 genomes]
rs73741459	1.00[AFR][1000 genomes]
rs73741462	1.00[AFR][1000 genomes]
rs73741464	1.00[AFR][1000 genomes]
rs73741469	0.88[AFR][1000 genomes]
rs73741470	0.88[AFR][1000 genomes]
rs73741473	0.88[AFR][1000 genomes]
rs73741475	0.86[AFR][1000 genomes]
rs73741481	0.86[AFR][1000 genomes]
rs7753902	0.86[AFR][1000 genomes]
rs9464029	0.98[AFR][1000 genomes]
rs9464031	0.93[YRI][hapmap];0.98[AFR][1000 genomes]
rs9464036	0.86[AFR][1000 genomes]
rs9464040	0.81[AFR][1000 genomes]
rs9464041	0.81[AFR][1000 genomes]
rs9474756	0.93[YRI][hapmap];0.98[AFR][1000 genomes]
rs9474758	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9474759	1.00[AFR][1000 genomes]
rs9474763	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9474764	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
2	chr6:54045800-54069200	Weak transcription	Fetal Heart	heart
3	chr6:54047200-54069600	Weak transcription	Right Ventricle	heart
4	chr6:54047400-54069600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:54054000-54058400	Weak transcription	HSMMtube	muscle
6	chr6:54054000-54058600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:54055200-54069600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:54056200-54059000	Enhancers	Adipose Nuclei	Adipose
9	chr6:54057400-54059600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:54057600-54059400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:54057600-54059400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:54057800-54058400	Flanking Active TSS	HUVEC	blood vessel
13	chr6:54057800-54058600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:54057800-54058800	Enhancers	Left Ventricle	heart
15	chr6:54057800-54058800	Enhancers	Right Atrium	heart
16	chr6:54057800-54059000	Enhancers	Osteobl	bone
17	chr6:54057800-54059400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:54057800-54059400	Enhancers	NHLF	lung
19	chr6:54058000-54058600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:54058000-54059000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:54058000-54059200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:54058000-54059400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:54058000-54059400	Enhancers	HSMM	muscle
24	chr6:54058000-54059600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr6:54058000-54059800	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr6:54058200-54059400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr6:54058200-54059400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:54058200-54059800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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