Variant report

Variant	rs9474758
Chromosome Location	chr6:54059654-54059655
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10046453	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12333151	0.86[YRI][hapmap];0.98[AFR][1000 genomes]
rs28837994	0.86[AFR][1000 genomes]
rs55853397	1.00[AFR][1000 genomes]
rs56341219	0.81[AFR][1000 genomes]
rs57136553	0.83[AFR][1000 genomes]
rs58270498	0.81[AFR][1000 genomes]
rs6931929	0.98[AFR][1000 genomes]
rs73741456	0.93[AFR][1000 genomes]
rs73741459	1.00[AFR][1000 genomes]
rs73741462	1.00[AFR][1000 genomes]
rs73741464	1.00[AFR][1000 genomes]
rs73741469	0.88[AFR][1000 genomes]
rs73741470	0.88[AFR][1000 genomes]
rs73741473	0.88[AFR][1000 genomes]
rs73741475	0.86[AFR][1000 genomes]
rs73741481	0.86[AFR][1000 genomes]
rs7753902	0.86[AFR][1000 genomes]
rs9464029	0.98[AFR][1000 genomes]
rs9464031	0.93[YRI][hapmap];0.98[AFR][1000 genomes]
rs9464036	0.86[AFR][1000 genomes]
rs9464040	0.81[AFR][1000 genomes]
rs9464041	0.81[AFR][1000 genomes]
rs9474756	0.93[YRI][hapmap];0.98[AFR][1000 genomes]
rs9474757	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9474759	1.00[AFR][1000 genomes]
rs9474763	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9474764	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
2	chr6:54045800-54069200	Weak transcription	Fetal Heart	heart
3	chr6:54047200-54069600	Weak transcription	Right Ventricle	heart
4	chr6:54047400-54069600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:54055200-54069600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:54058000-54059800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:54058200-54059800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:54058800-54101000	Weak transcription	Left Ventricle	heart
9	chr6:54059200-54062200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:54059400-54060000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:54059600-54062200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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