Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10484641	1.00[JPT][hapmap]
rs12055413	0.95[ASN][1000 genomes]
rs12055863	1.00[ASN][1000 genomes]
rs12175364	1.00[ASN][1000 genomes]
rs12176182	1.00[ASN][1000 genomes]
rs16885263	1.00[JPT][hapmap]
rs2291824	1.00[JPT][hapmap]
rs3777639	1.00[JPT][hapmap]
rs3777641	1.00[JPT][hapmap]
rs3777642	1.00[JPT][hapmap]
rs73446702	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73448726	0.97[AFR][1000 genomes]
rs9357803	1.00[ASN][1000 genomes]
rs9367564	1.00[JPT][hapmap]
rs9367565	1.00[JPT][hapmap]
rs9367571	0.95[ASN][1000 genomes]
rs9370293	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9370294	0.95[ASN][1000 genomes]
rs9370297	1.00[ASN][1000 genomes]
rs9370298	0.95[ASN][1000 genomes]
rs9382324	1.00[JPT][hapmap]
rs9382339	1.00[ASN][1000 genomes]
rs9382340	1.00[ASN][1000 genomes]
rs9395940	1.00[JPT][hapmap]
rs9395941	1.00[JPT][hapmap]
rs9395945	1.00[JPT][hapmap]
rs9395946	1.00[JPT][hapmap]
rs9395952	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9395955	1.00[ASN][1000 genomes]
rs9395956	1.00[ASN][1000 genomes]
rs9395957	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395960	1.00[ASN][1000 genomes]
rs9395961	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395963	1.00[ASN][1000 genomes]
rs9474814	1.00[JPT][hapmap]
rs9474848	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9474858	0.91[AFR][1000 genomes]
rs9474861	0.91[AFR][1000 genomes]
rs9474863	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv528901	chr6:54290333-54337130	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54284600-54292000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54285200-54291400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:54285600-54291200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search: