Variant report

Variant	rs9475066
Chromosome Location	chr6:54775695-54775696
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10484995	1.00[AMR][1000 genomes]
rs16885982	1.00[AMR][1000 genomes]
rs16885988	1.00[AMR][1000 genomes]
rs16885992	1.00[AMR][1000 genomes]
rs16886006	1.00[AMR][1000 genomes]
rs16886011	1.00[AMR][1000 genomes]
rs35360689	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73430674	1.00[AMR][1000 genomes]
rs73446077	1.00[AMR][1000 genomes]
rs73446082	1.00[AMR][1000 genomes]
rs73446087	1.00[AMR][1000 genomes]
rs73446089	1.00[AMR][1000 genomes]
rs73446094	1.00[AMR][1000 genomes]
rs9464155	1.00[AMR][1000 genomes]
rs9464159	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475065	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54765800-54780800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:54769000-54780800	Weak transcription	NHEK	skin
3	chr6:54770000-54781200	Weak transcription	HMEC	breast
4	chr6:54774600-54776600	Enhancers	Fetal Lung	lung
5	chr6:54774800-54781200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:54775000-54775800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr6:54775000-54775800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:54775000-54776000	Enhancers	Fetal Intestine Large	intestine
9	chr6:54775000-54776000	Enhancers	Fetal Intestine Small	intestine
10	chr6:54775200-54775800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr6:54775200-54776000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:54775200-54776000	Enhancers	Fetal Brain Male	brain
13	chr6:54775600-54775800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:54775600-54775800	Enhancers	Brain Cingulate Gyrus	brain
15	chr6:54775600-54780800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:54775600-54781400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:54775600-54788400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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