Variant report

Variant	rs9475639
Chromosome Location	chr6:56097528-56097529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10214687	1.00[AMR][1000 genomes]
rs16887633	1.00[AMR][1000 genomes]
rs2143520	1.00[AMR][1000 genomes]
rs9296829	1.00[AMR][1000 genomes]
rs9464343	1.00[AMR][1000 genomes]
rs9464344	1.00[AMR][1000 genomes]
rs9464346	1.00[AMR][1000 genomes]
rs9464367	1.00[YRI][hapmap]
rs9475554	1.00[AMR][1000 genomes]
rs9475555	1.00[AMR][1000 genomes]
rs9475557	1.00[AMR][1000 genomes]
rs9475561	1.00[AMR][1000 genomes]
rs9475569	1.00[AMR][1000 genomes]
rs9475570	1.00[AMR][1000 genomes]
rs9475571	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56082200-56104800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:56089200-56097600	Weak transcription	Aorta	Aorta
3	chr6:56092600-56099800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:56092600-56100000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:56093000-56100000	Weak transcription	Osteobl	bone
6	chr6:56095000-56097800	Enhancers	Colon Smooth Muscle	Colon
7	chr6:56096400-56097800	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:56096400-56099400	Weak transcription	Fetal Stomach	stomach
9	chr6:56096400-56099800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:56096400-56099800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:56096400-56099800	Weak transcription	A549	lung
12	chr6:56096400-56100000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:56096600-56098000	Enhancers	Stomach Smooth Muscle	stomach
14	chr6:56096600-56105400	Weak transcription	Psoas Muscle	Psoas
15	chr6:56097000-56097800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:56097200-56097600	Flanking Active TSS	Fetal Lung	lung
17	chr6:56097400-56097600	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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