Variant report

Variant	rs16887633
Chromosome Location	chr6:56042747-56042748
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10214687	1.00[AMR][1000 genomes]
rs16887622	1.00[AFR][1000 genomes]
rs16887649	1.00[AFR][1000 genomes]
rs16887677	0.90[AFR][1000 genomes]
rs2143520	1.00[AMR][1000 genomes]
rs7741531	0.83[AFR][1000 genomes]
rs9296829	1.00[AMR][1000 genomes]
rs9464343	1.00[AMR][1000 genomes]
rs9464344	1.00[AMR][1000 genomes]
rs9464346	1.00[AMR][1000 genomes]
rs9475554	1.00[AMR][1000 genomes]
rs9475555	1.00[AMR][1000 genomes]
rs9475557	1.00[AMR][1000 genomes]
rs9475561	1.00[AMR][1000 genomes]
rs9475569	1.00[AMR][1000 genomes]
rs9475570	1.00[AMR][1000 genomes]
rs9475571	1.00[AMR][1000 genomes]
rs9475639	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56021800-56053200	Weak transcription	Aorta	Aorta
2	chr6:56040800-56045800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:56041000-56044400	Weak transcription	Fetal Lung	lung
4	chr6:56041000-56046000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:56041000-56047400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:56042000-56046200	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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