Variant report

Variant	rs9484608
Chromosome Location	chr6:142596857-142596858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10085197	0.82[YRI][hapmap]
rs4559101	1.00[MEX][hapmap]
rs55804427	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73574428	0.83[AMR][1000 genomes]
rs9321860	0.88[LWK][hapmap];1.00[MEX][hapmap];0.82[AFR][1000 genomes]
rs9321863	1.00[YRI][hapmap]
rs9376684	0.82[YRI][hapmap]
rs9376685	1.00[YRI][hapmap]
rs9385991	1.00[YRI][hapmap]
rs9403377	1.00[YRI][hapmap]
rs9403378	1.00[YRI][hapmap]
rs9484609	0.95[AFR][1000 genomes]
rs9496311	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496324	0.83[AMR][1000 genomes]
rs9496331	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1029666	chr6:142594099-142643084	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142590600-142597000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:142595000-142597200	Enhancers	Fetal Intestine Large	intestine
3	chr6:142595000-142597600	Enhancers	Fetal Intestine Small	intestine
4	chr6:142595600-142598400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:142596000-142597200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:142596000-142597400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:142596000-142600800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:142596400-142597000	Flanking Active TSS	A549	lung
9	chr6:142596400-142597000	Enhancers	NHEK	skin
10	chr6:142596400-142597200	Enhancers	HepG2	liver
11	chr6:142596400-142597400	Enhancers	Placenta	Placenta
12	chr6:142596600-142597000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:142596800-142597200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:142596800-142597200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:142596800-142597200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:142596800-142597200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:142596800-142597200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:142596800-142597200	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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