Variant report

Variant	rs9496324
Chromosome Location	chr6:142616120-142616121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55804427	0.83[AMR][1000 genomes]
rs59792272	0.83[AMR][1000 genomes]
rs73574424	0.85[AMR][1000 genomes]
rs73574428	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73574429	0.85[AMR][1000 genomes]
rs9484608	0.83[AMR][1000 genomes]
rs9484611	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9484614	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9496311	0.83[AMR][1000 genomes]
rs9496315	0.83[AMR][1000 genomes]
rs9496316	0.83[AMR][1000 genomes]
rs9496319	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9496320	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9496323	0.85[AMR][1000 genomes]
rs9496325	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1029666	chr6:142594099-142643084	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142612400-142618200	Weak transcription	A549	lung
2	chr6:142613800-142618400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:142615200-142618400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:142615200-142618600	Weak transcription	Placenta	Placenta
5	chr6:142615600-142616400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:142615600-142616600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:142615600-142616600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:142615600-142616600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:142615800-142618000	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links