Variant report

Variant	rs9496316
Chromosome Location	chr6:142600314-142600315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs59792272	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73574428	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9484609	0.80[AFR][1000 genomes]
rs9484611	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484614	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496315	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496320	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496324	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1029666	chr6:142594099-142643084	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3378541	chr6:142600255-142600644	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142596000-142600800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:142597200-142600400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:142597200-142600400	Weak transcription	Fetal Intestine Large	intestine
4	chr6:142597400-142601000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:142597400-142601200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:142597400-142602000	Weak transcription	Placenta	Placenta
7	chr6:142597800-142600600	Weak transcription	HUVEC	blood vessel
8	chr6:142599600-142601600	Enhancers	Hela-S3	cervix
9	chr6:142599800-142601400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:142599800-142601600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:142600000-142601000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:142600000-142602200	Enhancers	HepG2	liver
13	chr6:142600200-142600400	Enhancers	Liver	Liver
14	chr6:142600200-142601000	Enhancers	HMEC	breast
15	chr6:142600200-142601000	Enhancers	NHEK	skin
16	chr6:142600200-142601400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:142600200-142601400	Enhancers	A549	lung
18	chr6:142600200-142601600	Enhancers	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links