Variant report

Variant	rs9485359
Chromosome Location	chr6:149541666-149541667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149535249..149539835-chr6:149540591..149543214,5	K562	blood:

Variant related genes	Relation type
ENSG00000228408	Chromatin interaction
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11965012	1.00[ASN][1000 genomes]
rs11968376	1.00[EUR][1000 genomes]
rs11968394	1.00[EUR][1000 genomes]
rs13437225	1.00[ASN][1000 genomes]
rs3813677	1.00[EUR][1000 genomes]
rs57567299	1.00[EUR][1000 genomes]
rs58764592	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73779098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73781703	1.00[ASN][1000 genomes]
rs7748133	0.87[ASN][1000 genomes]
rs7748668	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748833	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498254	1.00[EUR][1000 genomes]
rs9498258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs9498259	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149533200-149549400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:149534200-149547600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:149534400-149545800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:149534800-149542200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:149534800-149542200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:149534800-149548600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:149535000-149542600	Weak transcription	Brain Anterior Caudate	brain
8	chr6:149535000-149546800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:149535200-149542600	Weak transcription	HSMM	muscle
10	chr6:149537400-149542400	Weak transcription	Fetal Heart	heart
11	chr6:149538200-149544600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:149538200-149548600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:149539400-149544800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:149540000-149545200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:149540200-149542200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:149540200-149544400	Weak transcription	Fetal Lung	lung
17	chr6:149540400-149544800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:149540400-149551600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:149540600-149547200	Weak transcription	Brain Substantia Nigra	brain
20	chr6:149540800-149542000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:149541400-149546600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:149541600-149544600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links