Variant report

Variant	rs9498254
Chromosome Location	chr6:149536342-149536343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149529505..149531064-chr6:149535375..149537305,2	K562	blood:
2	chr6:149535644..149537986-chr6:149647515..149649040,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11968376	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11968394	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12201953	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12201961	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12203964	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12206090	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12215601	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3813677	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57567299	1.00[EUR][1000 genomes]
rs58764592	1.00[EUR][1000 genomes]
rs60916218	1.00[ASN][1000 genomes]
rs61166835	0.86[ASN][1000 genomes]
rs73779098	1.00[EUR][1000 genomes]
rs7748668	1.00[EUR][1000 genomes]
rs7748833	1.00[EUR][1000 genomes]
rs9485359	1.00[EUR][1000 genomes]
rs9498259	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149533200-149549400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:149534000-149537000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:149534200-149547600	Weak transcription	Primary T cells from cord blood	blood
4	chr6:149534400-149545800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:149534600-149538800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:149534600-149539000	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:149534800-149536800	Weak transcription	Fetal Thymus	thymus
8	chr6:149534800-149537600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:149534800-149538600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:149534800-149542200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:149534800-149542200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:149534800-149548600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:149535000-149537800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:149535000-149538800	Weak transcription	Brain Substantia Nigra	brain
15	chr6:149535000-149542600	Weak transcription	Brain Anterior Caudate	brain
16	chr6:149535000-149546800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:149535200-149536600	Weak transcription	GM12878-XiMat	blood
18	chr6:149535200-149539600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:149535200-149542600	Weak transcription	HSMM	muscle
20	chr6:149535400-149537000	Weak transcription	Fetal Heart	heart
21	chr6:149535400-149537800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:149535400-149538600	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:149535400-149539000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:149535400-149539400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:149535400-149539600	Weak transcription	Fetal Lung	lung
26	chr6:149535600-149536600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:149535600-149536800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:149535600-149537000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:149535600-149538600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:149535600-149538800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:149535600-149538800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:149535800-149539600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr6:149536000-149536400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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