Variant report

Variant	rs61166835
Chromosome Location	chr6:149514882-149514883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11968376	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11968394	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3813677	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4077989	1.00[AMR][1000 genomes]
rs56707372	1.00[AMR][1000 genomes]
rs57567299	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57568826	1.00[AMR][1000 genomes]
rs58920839	1.00[AMR][1000 genomes]
rs60916218	0.86[ASN][1000 genomes]
rs61671574	1.00[AMR][1000 genomes]
rs73603643	1.00[AMR][1000 genomes]
rs73603644	1.00[AMR][1000 genomes]
rs73603646	1.00[AMR][1000 genomes]
rs73603649	1.00[AMR][1000 genomes]
rs73603658	1.00[AMR][1000 genomes]
rs73603663	1.00[AMR][1000 genomes]
rs73603664	1.00[AMR][1000 genomes]
rs9498254	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149511800-149515400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:149511800-149516000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:149511800-149516400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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