Variant report

Variant	rs4077989
Chromosome Location	chr6:149437873-149437874
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11968376	1.00[AMR][1000 genomes]
rs11968394	1.00[AMR][1000 genomes]
rs3813677	1.00[AMR][1000 genomes]
rs56707372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567299	1.00[AMR][1000 genomes]
rs57568826	1.00[AMR][1000 genomes]
rs58920839	1.00[AMR][1000 genomes]
rs61166835	1.00[AMR][1000 genomes]
rs61671574	1.00[AMR][1000 genomes]
rs73603643	1.00[AMR][1000 genomes]
rs73603644	1.00[AMR][1000 genomes]
rs73603646	1.00[AMR][1000 genomes]
rs73603649	1.00[AMR][1000 genomes]
rs73603658	1.00[AMR][1000 genomes]
rs73603663	1.00[AMR][1000 genomes]
rs73603664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149433200-149443400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:149433800-149444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:149435000-149439400	Weak transcription	Aorta	Aorta
4	chr6:149435400-149440000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:149436200-149440000	Enhancers	K562	blood
6	chr6:149436400-149442600	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:149437000-149438000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:149437000-149438800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:149437200-149438400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:149437200-149439200	Enhancers	Stomach Smooth Muscle	stomach
11	chr6:149437400-149440200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:149437400-149440200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:149437400-149444400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:149437600-149439600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:149437600-149440000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:149437800-149440000	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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