Variant report

Variant	rs73603646
Chromosome Location	chr6:149430271-149430272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11968376	1.00[AMR][1000 genomes]
rs11968394	1.00[AMR][1000 genomes]
rs3813677	1.00[AMR][1000 genomes]
rs4077989	1.00[AMR][1000 genomes]
rs56707372	1.00[AMR][1000 genomes]
rs57567299	1.00[AMR][1000 genomes]
rs57568826	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57834128	0.98[AFR][1000 genomes]
rs58920839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166835	1.00[AMR][1000 genomes]
rs61671574	1.00[AMR][1000 genomes]
rs73603643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603652	0.90[AFR][1000 genomes]
rs73603658	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603663	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603664	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149427400-149430800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:149428200-149430400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:149428800-149430600	Enhancers	Brain Hippocampus Middle	brain
4	chr6:149429200-149437200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:149429400-149430400	Enhancers	Rectal Smooth Muscle	rectum
6	chr6:149430200-149431400	Flanking Active TSS	GM12878-XiMat	blood
7	chr6:149430200-149433000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:149430200-149434000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:149430200-149434000	Weak transcription	Ovary	ovary
10	chr6:149430200-149437200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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