Variant report

Variant	rs57568826
Chromosome Location	chr6:149433923-149433924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr6:149431536-149434647	GM12878	blood:	n/a	n/a
2	MTA3	chr6:149433488-149434643	GM12878	blood:	n/a	n/a
3	ZNF384	chr6:149433900-149434242	GM12878	blood:	n/a	n/a
4	BCLAF1	chr6:149433868-149434394	GM12878	blood:	n/a	n/a
5	CEBPB	chr6:149433628-149434472	GM12878	blood:	n/a	n/a
6	FOXM1	chr6:149433764-149434496	GM12878	blood:	n/a	n/a
7	RUNX3	chr6:149432653-149434526	GM12878	blood:	n/a	n/a
8	NFYB	chr6:149433810-149434137	GM12878	blood:	n/a	chr6:149433994-149434007
9	TBP	chr6:149433817-149434204	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000219487	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11968376	1.00[AMR][1000 genomes]
rs11968394	1.00[AMR][1000 genomes]
rs3813677	1.00[AMR][1000 genomes]
rs4077989	1.00[AMR][1000 genomes]
rs56707372	1.00[AMR][1000 genomes]
rs57567299	1.00[AMR][1000 genomes]
rs57834128	0.96[AFR][1000 genomes]
rs58920839	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166835	1.00[AMR][1000 genomes]
rs61671574	1.00[AMR][1000 genomes]
rs73603643	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603644	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603646	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603649	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603652	0.92[AFR][1000 genomes]
rs73603658	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603663	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603664	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149429200-149437200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:149430200-149434000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:149430200-149434000	Weak transcription	Ovary	ovary
4	chr6:149430200-149437200	Weak transcription	Brain Substantia Nigra	brain
5	chr6:149430600-149437200	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:149431600-149434400	Enhancers	Primary B cells from cord blood	blood
7	chr6:149431600-149434800	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:149432000-149434400	Flanking Active TSS	GM12878-XiMat	blood
9	chr6:149432000-149434600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:149432800-149434000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:149432800-149434000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:149432800-149436400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:149433200-149434000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:149433200-149443400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:149433400-149434400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:149433600-149434000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:149433600-149434600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:149433800-149434200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:149433800-149436400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:149433800-149436600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:149433800-149444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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