Variant report

Variant	rs56707372
Chromosome Location	chr6:149449344-149449345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149433670..149435558-chr6:149447633..149449437,2	MCF-7	breast:
2	chr6:149447328..149451282-chr6:149451738..149453433,3	K562	blood:

Variant related genes	Relation type
ENSG00000219487	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11968376	1.00[AMR][1000 genomes]
rs11968394	1.00[AMR][1000 genomes]
rs3813677	1.00[AMR][1000 genomes]
rs4077989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567299	1.00[AMR][1000 genomes]
rs57568826	1.00[AMR][1000 genomes]
rs58920839	1.00[AMR][1000 genomes]
rs61166835	1.00[AMR][1000 genomes]
rs61671574	1.00[AMR][1000 genomes]
rs73603643	1.00[AMR][1000 genomes]
rs73603644	1.00[AMR][1000 genomes]
rs73603646	1.00[AMR][1000 genomes]
rs73603649	1.00[AMR][1000 genomes]
rs73603658	1.00[AMR][1000 genomes]
rs73603663	1.00[AMR][1000 genomes]
rs73603664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149445400-149449400	Weak transcription	GM12878-XiMat	blood
2	chr6:149446800-149449400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:149447600-149449400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:149447600-149449600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:149447600-149449600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:149447600-149454400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:149447800-149449600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:149447800-149454200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr6:149448000-149449600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:149448000-149452600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:149448200-149449400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:149448200-149452200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr6:149448400-149449400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:149448400-149449400	Enhancers	K562	blood
15	chr6:149448400-149451200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr6:149448400-149452400	Enhancers	Primary hematopoietic stem cells	blood
17	chr6:149448400-149452400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:149448600-149449400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr6:149448600-149450400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:149448600-149450600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:149448800-149449800	Weak transcription	Hela-S3	cervix
22	chr6:149448800-149450200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:149448800-149450400	Weak transcription	Osteobl	bone
24	chr6:149448800-149452000	Enhancers	Primary T cells from cord blood	blood
25	chr6:149448800-149453600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr6:149448800-149454200	Enhancers	Placenta	Placenta
27	chr6:149449000-149449400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:149449000-149450200	Flanking Active TSS	Dnd41	blood
29	chr6:149449000-149450600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:149449000-149452000	Enhancers	NHLF	lung

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