Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149523368..149525032-chr6:149525284..149527153,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11968376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201953	1.00[CHB][hapmap]
rs12201961	1.00[CHB][hapmap]
rs12203964	1.00[CHB][hapmap]
rs12206090	1.00[CHB][hapmap]
rs12215601	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4077989	1.00[AMR][1000 genomes]
rs56707372	1.00[AMR][1000 genomes]
rs57567299	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57568826	1.00[AMR][1000 genomes]
rs58764592	1.00[EUR][1000 genomes]
rs58920839	1.00[AMR][1000 genomes]
rs60916218	0.86[ASN][1000 genomes]
rs61166835	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61671574	1.00[AMR][1000 genomes]
rs73603643	1.00[AMR][1000 genomes]
rs73603644	1.00[AMR][1000 genomes]
rs73603646	1.00[AMR][1000 genomes]
rs73603649	1.00[AMR][1000 genomes]
rs73603658	1.00[AMR][1000 genomes]
rs73603663	1.00[AMR][1000 genomes]
rs73603664	1.00[AMR][1000 genomes]
rs73779098	1.00[EUR][1000 genomes]
rs7748668	1.00[EUR][1000 genomes]
rs7748833	1.00[EUR][1000 genomes]
rs9485359	1.00[EUR][1000 genomes]
rs9498254	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9498259	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149521600-149523600	Enhancers	Brain Germinal Matrix	brain
2	chr6:149522800-149529000	Weak transcription	Fetal Heart	heart
3	chr6:149523200-149524000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:149523200-149524000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:149523200-149524600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:149523200-149525000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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