Variant report

Variant	rs9485380
Chromosome Location	chr6:149626400-149626401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs59598852	0.92[AFR][1000 genomes]
rs7745574	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9485381	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9485382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498295	0.80[AFR][1000 genomes]
rs9498300	0.85[AFR][1000 genomes]
rs9498305	0.83[AFR][1000 genomes]
rs9498306	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498307	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015360	chr6:149609804-149649982	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149626000-149626400	Weak transcription	Brain Anterior Caudate	brain
2	chr6:149626200-149627000	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:149626200-149627000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:149626200-149627200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:149626400-149626600	Enhancers	Brain Anterior Caudate	brain
6	chr6:149626400-149626800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:149626400-149627000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:149626400-149627200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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