Variant report
| Variant | rs9498307 |
|---|---|
| Chromosome Location | chr6:149622664-149622665 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:149615967..149618334-chr6:149622584..149624588,2 | K562 | blood: | |
| 2 | chr6:149617752..149621421-chr6:149622523..149625158,3 | K562 | blood: | |
| 3 | chr6:149621198..149623751-chr6:149635506..149639133,3 | MCF-7 | breast: | |
| 4 | chr6:149620609..149622948-chr6:149640554..149642656,2 | K562 | blood: | |
| 5 | chr6:149617347..149620525-chr6:149621010..149624915,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000055208 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs59598852 | 1.00[AFR][1000 genomes] |
| rs7745574 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9485379 | 0.84[YRI][hapmap] |
| rs9485380 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9485381 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9485382 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9498295 | 0.87[AFR][1000 genomes] |
| rs9498300 | 0.88[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs9498305 | 0.90[AFR][1000 genomes] |
| rs9498306 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9498309 | 0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024776 | chr6:149398652-149654593 | Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv1015360 | chr6:149609804-149649982 | Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv1024106 | chr6:149622349-149745053 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
