Variant report

Variant	rs9498300
Chromosome Location	chr6:149615049-149615050
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12110899	0.86[YRI][hapmap]
rs59598852	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7745574	0.87[YRI][hapmap];0.92[AFR][1000 genomes]
rs7761396	0.83[AMR][1000 genomes]
rs9485379	0.83[AMR][1000 genomes]
rs9485380	0.85[AFR][1000 genomes]
rs9485381	0.86[AFR][1000 genomes]
rs9485382	0.85[AFR][1000 genomes]
rs9498295	0.95[AFR][1000 genomes]
rs9498305	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498306	0.86[YRI][hapmap];0.92[AFR][1000 genomes]
rs9498307	0.88[YRI][hapmap];0.92[AFR][1000 genomes]
rs9498309	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015360	chr6:149609804-149649982	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149613200-149615600	Enhancers	NHEK	skin
2	chr6:149613400-149615400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:149614000-149615600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:149614000-149615600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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