Variant report

Variant	rs9488163
Chromosome Location	chr6:113712644-113712645
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs6935853	1.00[AMR][1000 genomes]
rs9320445	1.00[AMR][1000 genomes]
rs9481348	1.00[AMR][1000 genomes]
rs9481362	1.00[AMR][1000 genomes]
rs9481364	1.00[AMR][1000 genomes]
rs9481366	1.00[AMR][1000 genomes]
rs9488164	1.00[AMR][1000 genomes]
rs9488165	1.00[AMR][1000 genomes]
rs9488171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488192	1.00[AMR][1000 genomes]
rs9488193	1.00[AMR][1000 genomes]
rs9654627	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113706800-113715600	Weak transcription	Fetal Lung	lung
2	chr6:113707400-113717600	Weak transcription	Osteobl	bone
3	chr6:113711400-113714800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:113711800-113714400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:113711800-113714400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:113712200-113717000	Weak transcription	Ovary	ovary
7	chr6:113712200-113717200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:113712400-113712800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:113712400-113712800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:113712400-113713000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:113712400-113714000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:113712400-113716800	Weak transcription	Fetal Stomach	stomach
13	chr6:113712600-113713000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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