Variant report

Variant	rs9488192
Chromosome Location	chr6:113778563-113778564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs6935853	1.00[AMR][1000 genomes]
rs9320445	1.00[AMR][1000 genomes]
rs9481348	1.00[AMR][1000 genomes]
rs9481362	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9481364	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9481366	1.00[AMR][1000 genomes]
rs9488163	1.00[AMR][1000 genomes]
rs9488164	1.00[AMR][1000 genomes]
rs9488165	1.00[AMR][1000 genomes]
rs9488171	1.00[AMR][1000 genomes]
rs9488172	1.00[AMR][1000 genomes]
rs9488174	1.00[AMR][1000 genomes]
rs9488177	1.00[AMR][1000 genomes]
rs9488193	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9654627	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113771400-113779400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:113771600-113782400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:113772400-113785800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:113777200-113780000	Enhancers	NHDF-Ad	bronchial
5	chr6:113777200-113785600	Weak transcription	A549	lung
6	chr6:113777400-113779000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:113777400-113780000	Enhancers	HSMMtube	muscle
8	chr6:113777800-113778600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:113777800-113778600	Enhancers	Lung	lung
10	chr6:113777800-113779000	Enhancers	Placenta	Placenta
11	chr6:113777800-113779000	Enhancers	Osteobl	bone
12	chr6:113777800-113779200	Enhancers	HUVEC	blood vessel
13	chr6:113777800-113780000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:113777800-113780000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:113777800-113780000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:113777800-113780000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:113777800-113780000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:113777800-113780000	Enhancers	HSMM	muscle
19	chr6:113777800-113780000	Enhancers	NHLF	lung
20	chr6:113777800-113780600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:113778000-113778600	Enhancers	Right Atrium	heart
22	chr6:113778000-113780400	Enhancers	NH-A	brain
23	chr6:113778200-113778600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:113778200-113779000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:113778200-113780200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:113778200-113782400	Weak transcription	NHEK	skin
27	chr6:113778400-113778800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:113778400-113779000	Enhancers	Rectal Smooth Muscle	rectum
29	chr6:113778400-113780000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:113778400-113780200	Enhancers	Fetal Lung	lung
31	chr6:113778400-113780400	Enhancers	Ovary	ovary

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