Variant report

Variant	rs9488174
Chromosome Location	chr6:113735341-113735342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113735341..113737235-chr6:113752412..113754611,2	MCF-7	breast:
2	chr6:113732055..113735601-chr6:114178607..114183451,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232316	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs6935853	1.00[AMR][1000 genomes]
rs9320445	1.00[AMR][1000 genomes]
rs9481348	1.00[AMR][1000 genomes]
rs9481362	1.00[AMR][1000 genomes]
rs9481364	1.00[AMR][1000 genomes]
rs9481366	1.00[AMR][1000 genomes]
rs9488163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488164	1.00[AMR][1000 genomes]
rs9488165	1.00[AMR][1000 genomes]
rs9488171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488192	1.00[AMR][1000 genomes]
rs9488193	1.00[AMR][1000 genomes]
rs9654627	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113726200-113736800	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:113731200-113737200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:113731600-113736200	Enhancers	A549	lung
4	chr6:113732600-113735400	Weak transcription	HMEC	breast
5	chr6:113733400-113738400	Enhancers	NHDF-Ad	bronchial
6	chr6:113733800-113736200	Enhancers	Osteobl	bone
7	chr6:113733800-113738200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:113733800-113738200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:113734200-113737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:113734400-113735400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:113734400-113735400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:113734400-113735400	Weak transcription	HSMM	muscle
13	chr6:113734400-113735400	Weak transcription	HUVEC	blood vessel
14	chr6:113734400-113735600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:113734400-113735600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:113734600-113735800	Enhancers	Stomach Mucosa	stomach
17	chr6:113734600-113736000	Weak transcription	NHLF	lung
18	chr6:113735000-113735600	Enhancers	Fetal Heart	heart
19	chr6:113735000-113736000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:113735200-113735800	Enhancers	Hela-S3	cervix
21	chr6:113735200-113736000	Weak transcription	NHEK	skin

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