The 2.0 version of rSNPBase

Variant report

Variant rs9489219
Chromosome Location chr6:117873740-117873741
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:117869800-117874200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr6:117869800-117880000 Weak transcription Aorta Aorta
3 chr6:117869800-117880000 Weak transcription Brain Substantia Nigra brain
4 chr6:117869800-117882600 Weak transcription Brain Germinal Matrix brain
5 chr6:117869800-117883200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr6:117869800-117884200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr6:117869800-117884400 Weak transcription Ovary ovary
8 chr6:117869800-117885200 Weak transcription Fetal Stomach stomach
9 chr6:117869800-117889000 Weak transcription Left Ventricle heart
10 chr6:117869800-117889400 Weak transcription Psoas Muscle Psoas
11 chr6:117869800-117889600 Weak transcription Colonic Mucosa Colon
12 chr6:117869800-117894400 Weak transcription Lung lung
13 chr6:117869800-117903800 Weak transcription Spleen Spleen
14 chr6:117869800-117904000 Weak transcription Gastric stomach
15 chr6:117869800-117904000 Weak transcription Pancreas Pancrea
16 chr6:117870000-117877000 Weak transcription Brain Inferior Temporal Lobe brain
17 chr6:117870000-117879800 Weak transcription Brain Hippocampus Middle brain
18 chr6:117870000-117881600 Weak transcription Primary monocytes fromperipheralblood blood
19 chr6:117870000-117881800 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr6:117870000-117882600 Weak transcription Adipose Nuclei Adipose
21 chr6:117870000-117884200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr6:117870000-117886800 Weak transcription Rectal Smooth Muscle rectum
23 chr6:117870200-117876600 Weak transcription Liver Liver
24 chr6:117870200-117879400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr6:117870200-117884200 Weak transcription Fetal Brain Male brain
26 chr6:117870400-117874000 Weak transcription Primary hematopoietic stem cells short term culture blood
27 chr6:117870400-117875000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr6:117870400-117876400 Weak transcription NHLF lung
29 chr6:117870400-117876600 Weak transcription Pancreatic Islets Pancreatic Islet
30 chr6:117870400-117879800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr6:117870400-117880000 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr6:117870400-117880200 Weak transcription Esophagus oesophagus
33 chr6:117870400-117880400 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr6:117870400-117883000 Weak transcription Placenta Placenta
35 chr6:117870400-117883800 Weak transcription Brain Angular Gyrus brain
36 chr6:117870400-117883800 Weak transcription Fetal Muscle Trunk muscle
37 chr6:117870400-117884000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr6:117870400-117884000 Weak transcription Stomach Smooth Muscle stomach
39 chr6:117870400-117884200 Weak transcription Fetal Muscle Leg muscle
40 chr6:117870400-117884400 Weak transcription Fetal Intestine Small intestine
41 chr6:117870400-117886800 Weak transcription Primary hematopoietic stem cells blood
42 chr6:117870400-117889600 Weak transcription Brain Cingulate Gyrus brain
43 chr6:117870400-117889600 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr6:117870600-117876600 Weak transcription HepG2 liver
45 chr6:117870600-117879000 Weak transcription GM12878-XiMat blood
46 chr6:117870600-117880200 Weak transcription Thymus Thymus
47 chr6:117870600-117884000 Weak transcription Duodenum Mucosa Duodenum
48 chr6:117870600-117884200 Weak transcription Fetal Intestine Large intestine
49 chr6:117870600-117886800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr6:117870800-117874400 Weak transcription iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015