Variant report

Variant	rs9489221
Chromosome Location	chr6:117904012-117904013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117802812..117805329-chr6:117903615..117905479,2	MCF-7	breast:
2	chr6:117901608..117904180-chr6:117924058..117926949,2	K562	blood:

Variant related genes	Relation type
ENSG00000164465	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12181630	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17079406	1.00[AMR][1000 genomes]
rs59241104	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489219	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489224	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489225	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489233	1.00[AMR][1000 genomes]
rs9489234	1.00[AMR][1000 genomes]
rs9489236	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489237	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489239	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489240	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489241	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489242	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9767720	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117871600-117922600	Weak transcription	Stomach Mucosa	stomach
2	chr6:117872200-117905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:117874600-117921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:117876800-117919800	Weak transcription	Hela-S3	cervix
5	chr6:117882600-117916400	Weak transcription	Small Intestine	intestine
6	chr6:117884600-117916200	Weak transcription	Fetal Brain Male	brain
7	chr6:117887600-117922200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:117887800-117906800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:117889800-117905600	Weak transcription	Ovary	ovary
10	chr6:117890600-117912600	Weak transcription	Fetal Heart	heart
11	chr6:117890600-117918600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:117890800-117910000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:117890800-117914000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:117890800-117918400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:117890800-117919800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:117890800-117919800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:117890800-117920600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:117891000-117906800	Weak transcription	Psoas Muscle	Psoas
19	chr6:117891000-117910000	Weak transcription	NHEK	skin
20	chr6:117891000-117911200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:117891000-117920600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:117892200-117918400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:117892200-117921400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:117892400-117910000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:117892400-117920800	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:117894200-117919000	Weak transcription	Fetal Kidney	kidney
27	chr6:117894600-117910200	Weak transcription	HUVEC	blood vessel
28	chr6:117894800-117909800	Weak transcription	Left Ventricle	heart
29	chr6:117894800-117910800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:117894800-117920600	Weak transcription	HSMMtube	muscle
31	chr6:117894800-117921000	Weak transcription	Right Ventricle	heart
32	chr6:117894800-117922400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:117895200-117910800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr6:117895400-117910000	Weak transcription	Adipose Nuclei	Adipose
35	chr6:117895400-117918400	Weak transcription	NHDF-Ad	bronchial
36	chr6:117895400-117920400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:117895800-117904200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:117896400-117910200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:117896400-117911200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:117896600-117909400	Weak transcription	Placenta	Placenta
41	chr6:117897200-117910600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:117898400-117920000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:117899600-117909000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:117899600-117918600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:117899800-117910800	Weak transcription	A549	lung
46	chr6:117899800-117918200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:117900200-117905600	Weak transcription	NH-A	brain
48	chr6:117900200-117908200	Weak transcription	Liver	Liver
49	chr6:117900400-117904200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr6:117900400-117918600	Weak transcription	HMEC	breast

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