Variant report

Variant	rs9489233
Chromosome Location	chr6:117938479-117938480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12181630	1.00[AMR][1000 genomes]
rs17079406	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59241104	1.00[AMR][1000 genomes]
rs9489219	1.00[AMR][1000 genomes]
rs9489221	1.00[AMR][1000 genomes]
rs9489224	1.00[AMR][1000 genomes]
rs9489225	1.00[AMR][1000 genomes]
rs9489234	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9489236	1.00[AMR][1000 genomes]
rs9489237	1.00[AMR][1000 genomes]
rs9489239	1.00[AMR][1000 genomes]
rs9489240	1.00[AMR][1000 genomes]
rs9489241	1.00[AMR][1000 genomes]
rs9489242	1.00[AMR][1000 genomes]
rs9767720	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3333863	chr6:117935959-117940757	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117929400-117938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:117934200-117938600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:117937000-117939000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr6:117937000-117939000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:117937200-117938600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:117937200-117938600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:117937200-117938600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:117937200-117938600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:117937200-117941200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:117937400-117938600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:117937400-117938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:117937400-117941400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:117937600-117938800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:117937600-117941400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:117937800-117938600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:117937800-117938600	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:117938200-117939200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:117938400-117938600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:117938400-117939000	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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