The 2.0 version of rSNPBase

Variant report

Variant rs9489680
Chromosome Location chr6:119625911-119625912
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:119590800-119626600 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr6:119592400-119633600 Weak transcription Primary T cells from cord blood blood
3 chr6:119592600-119627200 Weak transcription Dnd41 blood
4 chr6:119593000-119626800 Weak transcription Primary monocytes fromperipheralblood blood
5 chr6:119597200-119627400 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr6:119599800-119632600 Weak transcription Spleen Spleen
7 chr6:119600000-119629000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr6:119602400-119629200 Weak transcription NH-A brain
9 chr6:119602600-119627400 Weak transcription Gastric stomach
10 chr6:119602600-119629000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr6:119602600-119635600 Weak transcription Esophagus oesophagus
12 chr6:119603400-119626800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr6:119604400-119626600 Weak transcription Primary T regulatory cells fromperipheralblood blood
14 chr6:119605600-119626600 Weak transcription GM12878-XiMat blood
15 chr6:119606200-119626800 Weak transcription Primary B cells from peripheral blood blood
16 chr6:119607200-119626800 Weak transcription Colon Smooth Muscle Colon
17 chr6:119607400-119626800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr6:119607600-119628600 Weak transcription Muscle Satellite Cultured Cells --
19 chr6:119609200-119626800 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr6:119611400-119626600 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr6:119611400-119627400 Weak transcription Rectal Smooth Muscle rectum
22 chr6:119611800-119627000 Weak transcription Fetal Lung lung
23 chr6:119614200-119629000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr6:119615400-119632600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr6:119616400-119630200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
26 chr6:119617200-119637400 Weak transcription Aorta Aorta
27 chr6:119617400-119627000 Weak transcription Brain Anterior Caudate brain
28 chr6:119617400-119628200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr6:119617600-119629000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr6:119617600-119632200 Weak transcription Right Ventricle heart
31 chr6:119617800-119626600 Weak transcription NHDF-Ad bronchial
32 chr6:119618000-119626600 Weak transcription Lung lung
33 chr6:119618000-119629000 Weak transcription HUES64 Cell Line embryonic stem cell
34 chr6:119618000-119629200 Weak transcription HUES6 Cell Line embryonic stem cell
35 chr6:119618000-119630200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr6:119618200-119633800 Weak transcription Colonic Mucosa Colon
37 chr6:119618600-119629200 Weak transcription Primary neutrophils fromperipheralblood blood
38 chr6:119618600-119630200 Weak transcription Small Intestine intestine
39 chr6:119619400-119632800 Weak transcription Ovary ovary
40 chr6:119620400-119627400 Weak transcription Fetal Muscle Leg muscle
41 chr6:119620800-119627000 Weak transcription Fetal Muscle Trunk muscle
42 chr6:119621000-119627000 Weak transcription Primary T helper cells PMA-I stimulated --
43 chr6:119621000-119627800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr6:119621000-119628200 Strong transcription Liver Liver
45 chr6:119621400-119627400 Strong transcription HepG2 liver
46 chr6:119621600-119628000 Strong transcription Fetal Intestine Large intestine
47 chr6:119621600-119633600 Weak transcription Primary T killer naive cells fromperipheralblood blood
48 chr6:119621600-119634000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr6:119621800-119629600 Weak transcription Fetal Intestine Small intestine
50 chr6:119622600-119626600 Weak transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015