Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10499178	0.88[JPT][hapmap]
rs10499181	0.94[JPT][hapmap]
rs10872376	0.84[EUR][1000 genomes]
rs17059760	0.88[JPT][hapmap]
rs17059787	0.88[JPT][hapmap]
rs17059799	0.88[JPT][hapmap]
rs17059801	0.88[JPT][hapmap]
rs17059808	0.88[JPT][hapmap]
rs17059810	0.88[JPT][hapmap]
rs17059851	0.88[JPT][hapmap]
rs17059853	0.88[JPT][hapmap]
rs17059909	0.87[JPT][hapmap]
rs17059938	0.88[JPT][hapmap]
rs17059963	0.88[JPT][hapmap]
rs17059968	0.94[JPT][hapmap]
rs17059974	0.88[JPT][hapmap]
rs17059981	0.88[JPT][hapmap]
rs1999473	0.87[JPT][hapmap]
rs2183968	0.84[CHD][hapmap];0.94[JPT][hapmap]
rs2275064	0.88[JPT][hapmap]
rs3777448	0.82[JPT][hapmap]
rs3777456	0.88[JPT][hapmap]
rs3822865	0.88[JPT][hapmap]
rs4142581	0.88[JPT][hapmap]
rs6899793	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6900266	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7745498	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv10623	chr6:131397221-131418195	Active TSS Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131401800-131403800	Enhancers	HepG2	liver

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