Variant report

Variant	rs9492883
Chromosome Location	chr6:131573872-131573873
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10484763	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11154621	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154622	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754401	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755717	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758994	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759793	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759926	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1190788	1.00[CHB][hapmap]
rs1190794	1.00[CHB][hapmap]
rs1190799	1.00[CHB][hapmap]
rs1190801	1.00[CHB][hapmap]
rs1190805	1.00[CHB][hapmap];0.81[YRI][hapmap];0.84[ASN][1000 genomes]
rs1190806	1.00[CHB][hapmap];0.81[YRI][hapmap];0.84[ASN][1000 genomes]
rs1190812	0.85[YRI][hapmap]
rs11961577	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1209159	1.00[CHB][hapmap]
rs1317667	1.00[ASN][1000 genomes]
rs13195700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205441	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570348	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1729549	1.00[CHB][hapmap]
rs1729558	1.00[CHB][hapmap]
rs1746470	1.00[CHB][hapmap]
rs1746471	1.00[CHB][hapmap]
rs1746473	1.00[CHB][hapmap]
rs17573187	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17651753	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17787964	1.00[CHB][hapmap]
rs1885641	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077490	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327102	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360555	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34326915	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34601891	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34699635	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35017713	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35561719	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35673664	0.90[EUR][1000 genomes]
rs35746376	1.00[ASN][1000 genomes]
rs3777476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777477	0.89[EUR][1000 genomes]
rs3777487	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3777489	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777493	1.00[ASN][1000 genomes]
rs3850239	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3903759	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs4310080	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4424112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4596509	0.92[EUR][1000 genomes]
rs55893652	0.92[ASN][1000 genomes]
rs56059672	0.92[ASN][1000 genomes]
rs66533103	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67021539	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67399092	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749375	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743894	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9483238	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492861	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9492864	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492868	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492869	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492874	0.81[EUR][1000 genomes]
rs9492877	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492880	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv886665	chr6:131518894-131611309	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	esv1835599	chr6:131554291-131590766	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv886666	chr6:131573433-131666295	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131563000-131580000	Weak transcription	Small Intestine	intestine
2	chr6:131566800-131576200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:131567200-131576400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:131571000-131574000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:131571000-131574400	Active TSS	Brain Germinal Matrix	brain
6	chr6:131571000-131574400	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr6:131571000-131574400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:131571000-131574400	Active TSS	Fetal Intestine Large	intestine
9	chr6:131571200-131574000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:131571200-131574000	Active TSS	Brain Hippocampus Middle	brain
11	chr6:131571200-131574200	Active TSS	Brain Cingulate Gyrus	brain
12	chr6:131571200-131574200	Active TSS	Fetal Brain Female	brain
13	chr6:131571200-131574400	Active TSS	Brain Angular Gyrus	brain
14	chr6:131571200-131575200	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr6:131571600-131574000	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:131571800-131574200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:131571800-131574200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:131571800-131576600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:131571800-131576600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:131571800-131580000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:131571800-131583000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr6:131571800-131583200	Weak transcription	Aorta	Aorta
23	chr6:131571800-131587200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:131571800-131591400	Weak transcription	Psoas Muscle	Psoas
25	chr6:131571800-131592600	Weak transcription	Fetal Thymus	thymus
26	chr6:131571800-131596800	Weak transcription	Lung	lung
27	chr6:131571800-131603000	Weak transcription	Esophagus	oesophagus
28	chr6:131571800-131614400	Weak transcription	Gastric	stomach
29	chr6:131572000-131574400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:131572200-131576600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:131572200-131576600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:131572200-131613000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:131572400-131574200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr6:131572400-131575000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:131572400-131576200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:131572400-131576200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:131572600-131574200	Enhancers	H1 Cell Line	embryonic stem cell
38	chr6:131572600-131587000	Weak transcription	Brain Substantia Nigra	brain
39	chr6:131572800-131574400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:131572800-131578600	Weak transcription	Primary B cells from cord blood	blood
41	chr6:131573000-131574000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:131573000-131574400	Active TSS	Pancreas	Pancrea
43	chr6:131573000-131590600	Weak transcription	Adipose Nuclei	Adipose
44	chr6:131573200-131574000	Enhancers	Primary hematopoietic stem cells	blood
45	chr6:131573200-131574000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr6:131573400-131574000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:131573400-131574000	Active TSS	Brain Anterior Caudate	brain
48	chr6:131573400-131574000	Enhancers	Fetal Heart	heart
49	chr6:131573400-131574200	Enhancers	Spleen	Spleen
50	chr6:131573400-131576800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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